species:   Scscl
pid:       PID1702
parent:    Ssc-milR-178
paralog:   
locus:     NW_001820832.1:611592-611671
matures:   ['UGGUGUUGUCGGUUCCGCAAGU', 'UUGGUGGGAUCCUUGCCAAACCAUU']
srr:       SRR12527899
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram NW_001820832.1:611592-611671

4 out of bounds
10 alignments
2 proper strand
2 stranded perfect matches

        ************************                ***************************     
CCUGGGUAGAUGGUGUUGUCGGUUCCGCAAGUCUUAACGGCACAUCCGACUUGGUGGGAUCCUUGCCAAACCAUUUGGGU
(((....(((((((...((.(((((((((((((..............))))).))))))))...))...)))))))))).
----------UGGUGUUGUCGGUUCCGCAAGU------------------------------------------------ l=22 a=2 c
--------------------------------------------------UUGGUGGGAUCCUUGCCAAACCAUU----- l=25 a=0 c*
----------UGGUGUUGUCGGUUCCGCAAGU------------------------------------------------ l=22 a=2 ma
--------------------------------------------------UUGGUGGGAUCCUUGCCAAACCAUU----- l=25 a=0 ma*

----------UGGUGUUGUCGGUUCCGCAAGU------------------------------------------------ l=22 a=2 (c,ma)

mb-01011
ax-1001011
ku-01
ss-101110001100
fn-101
